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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015887657.1_cds_XP_016442072.1_37369
CDS Infomation

[gene=LOC107767548] [db_xref=GeneID:107767548] [protein=probable polygalacturonase At3g15720 isoform X7] [protein_id=XP_016442072.1] [location=complement(join(39290..39523,39614..39730,40141..40249,40333..40414,41713..41920,42066..42092,42430..42591,43424..43561,44337..44339))] [gbkey=CDS]
Sequence

ATGGCATTCAAACAAGCTTGGACAGCTACTTGTAGCAGTAAAAGTAGAAATCCGTCAATG
CTTATACCAAGTGAAAAGTCATTTTTAATACGGCCTATTACATTCCAAGGACCTTGCAAG
TCCTCCAATATTCATCTACAATTATCAGGATCAATTGTAGCACCAGAGGATCCAAAGGAA
TGGAGAGGTTGTGAAAATGTTAGTTGGATTTATTTTACAGGTGTTTTTGGTCTCTTCATC
AATGGTTCTGGTACTATCAATGGCAATGGCCAACGCTGGTGGAAAATTCCTAGTGGTATC
AGGGTGAATGGAACTTGCACTAAACCAACTGCTGTCCACTTCAATTATTGTAACGGCCTT
CAATTGAGTGGAATTAAGCTAGTGAATAGTTCGAGAAACCATATAAGCCTGACTTACAGC
AAAGGAGTAACCATCTCAAATATTCATATAAGTGCACCAAAATATAGTCGCAATACTGAT
GGTATTGATATCTCTAACTCTAGCCAACTTCACATTCAAGACTCCACTATTCAGACAGGT
GATGACTGCATTGCCATCAATACTGGGTGCGTTGATATTCATATTTCTGGTATTTCATGT
GGACCAGGGCATGGTATAAGTGTGGGTAGCTTAGGTCCAGATAACACATATGCGTATGTG
GACAACGTCTATGTAACAAATTGTAACCTTGTGGGAACTCAGAATGGTGTTAGAATTAAG
ACATGGCAGGGTGGTTCTGGATATGCTAGGTCTATACATTTTGAAGATATTCACCTCAAA
AATGTTGAAAACCCCATCATTATTGATCAGAATTATTGCAATGGAGACCATTCATGTCAA
CCTCAGGAAAGCGCAGTGAAAGTGAGCTATATAACATACAAGAATATACATGGAAGTACA
AGCAGCAAAGCAGCAATAAATTTGAACTGTAGCAATAGCACAGCTTGCACCAACATTGAT
ATGGAGAATATCAACATAACTCCAGTTGTCTCTGGACAAAAGATTTTTGCTATTTGCAAT
AATGCCAAAGGAAAAGCCTCTTCAACTTCACCTCCTGTACCTTGCTTGGATAAATATTAG

Peptide Sequence

PEP ID

XP_016442072.1
PEP Infomation

PREDICTED: probable polygalacturonase At3g15720 isoform X7 [Nicotiana tabacum]
Sequence

MAFKQAWTATCSSKSRNPSMLIPSEKSFLIRPITFQGPCKSSNIHLQLSGSIVAPEDPKE
WRGCENVSWIYFTGVFGLFINGSGTINGNGQRWWKIPSGIRVNGTCTKPTAVHFNYCNGL
QLSGIKLVNSSRNHISLTYSKGVTISNIHISAPKYSRNTDGIDISNSSQLHIQDSTIQTG
DDCIAINTGCVDIHISGISCGPGHGISVGSLGPDNTYAYVDNVYVTNCNLVGTQNGVRIK
TWQGGSGYARSIHFEDIHLKNVENPIIIDQNYCNGDHSCQPQESAVKVSYITYKNIHGST
SSKAAINLNCSNSTACTNIDMENINITPVVSGQKIFAICNNAKGKASSTSPPVPCLDKY

Transcript Sequence

Gene sequence data has not been registered.